Last updated on 2025-08-01 17:51:03 CEST.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [78s/114s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.478, system: 0.038, elapsed: 2.205 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.903, system: 0.069, elapsed: 15.797 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.191, system: 0.014, elapsed: 0.387 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.686, system: 0.181, elapsed: 6.704 seconds]
Computing values for grid cells...
... done. [user: 0.167, system: 0.004, elapsed: 0.272 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.969, system: 0.326, elapsed: 26.298 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.421, system: 0.030, elapsed: 2.056 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.936, system: 0.073, elapsed: 14.713 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.184, system: 0.012, elapsed: 0.297 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.633, system: 0.160, elapsed: 4.805 seconds]
Computing values for grid cells...
... done. [user: 0.164, system: 0.004, elapsed: 0.178 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.861, system: 0.297, elapsed: 22.881 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.485, system: 0.030, elapsed: 1.838 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.852, system: 0.083, elapsed: 12.474 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.185, system: 0.011, elapsed: 0.256 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.742, system: 0.179, elapsed: 5.626 seconds]
Computing values for grid cells...
... done. [user: 0.162, system: 0.004, elapsed: 0.197 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.118, system: 0.200, elapsed: 0.880 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.153, system: 0.530, elapsed: 22.059 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.487, system: 0.033, elapsed: 2.193 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.951, system: 0.132, elapsed: 12.817 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.189, system: 0.016, elapsed: 0.343 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.740, system: 0.217, elapsed: 5.891 seconds]
Computing values for grid cells...
... done. [user: 0.165, system: 0.005, elapsed: 0.222 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.215, system: 0.541, elapsed: 13.893 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 25.406, system: 0.981, elapsed: 36.331 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [78s/110s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.527, system: 0.040, elapsed: 2.388 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.834, system: 0.067, elapsed: 12.526 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.181, system: 0.012, elapsed: 0.266 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.568, system: 0.178, elapsed: 5.859 seconds]
Computing values for grid cells...
... done. [user: 0.159, system: 0.003, elapsed: 0.279 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.800, system: 0.316, elapsed: 22.172 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.475, system: 0.027, elapsed: 2.787 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.985, system: 0.064, elapsed: 15.476 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.182, system: 0.011, elapsed: 0.323 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.695, system: 0.177, elapsed: 6.520 seconds]
Computing values for grid cells...
... done. [user: 0.165, system: 0.003, elapsed: 0.267 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.044, system: 0.304, elapsed: 26.283 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.505, system: 0.028, elapsed: 2.492 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.917, system: 0.076, elapsed: 12.651 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.185, system: 0.010, elapsed: 0.237 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.461, system: 0.153, elapsed: 4.631 seconds]
Computing values for grid cells...
... done. [user: 0.165, system: 0.005, elapsed: 0.182 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.070, system: 0.212, elapsed: 0.908 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.940, system: 0.521, elapsed: 22.032 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.508, system: 0.034, elapsed: 1.839 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.863, system: 0.083, elapsed: 11.406 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.182, system: 0.012, elapsed: 0.241 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.634, system: 0.222, elapsed: 5.379 seconds]
Computing values for grid cells...
... done. [user: 0.159, system: 0.003, elapsed: 0.197 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 9.891, system: 0.539, elapsed: 13.497 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 24.856, system: 0.924, elapsed: 33.368 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64