Last updated on 2025-09-03 01:53:39 CEST.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [75s/115s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.472, system: 0.038, elapsed: 2.871 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.906, system: 0.112, elapsed: 23.805 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.188, system: 0.018, elapsed: 0.287 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.783, system: 0.277, elapsed: 5.510 seconds]
Computing values for grid cells...
... done. [user: 0.173, system: 0.012, elapsed: 0.284 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.054, system: 0.487, elapsed: 33.808 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.832, system: 0.133, elapsed: 3.691 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.038, system: 0.306, elapsed: 12.942 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.188, system: 0.021, elapsed: 0.280 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.618, system: 0.191, elapsed: 4.684 seconds]
Computing values for grid cells...
... done. [user: 0.151, system: 0.002, elapsed: 0.154 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.346, system: 0.685, elapsed: 22.468 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.357, system: 0.022, elapsed: 1.389 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 7.316, system: 0.026, elapsed: 7.354 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.159, system: 0.008, elapsed: 0.167 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 2.825, system: 0.128, elapsed: 2.958 seconds]
Computing values for grid cells...
... done. [user: 0.135, system: 0.002, elapsed: 0.137 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 0.891, system: 0.162, elapsed: 1.141 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 13.207, system: 0.366, elapsed: 13.874 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.159, system: 0.021, elapsed: 1.182 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 7.590, system: 0.037, elapsed: 7.751 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.178, system: 0.011, elapsed: 0.192 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.776, system: 0.237, elapsed: 5.105 seconds]
Computing values for grid cells...
... done. [user: 0.180, system: 0.008, elapsed: 0.223 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.506, system: 0.531, elapsed: 17.969 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 23.970, system: 0.876, elapsed: 33.180 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [78s/126s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.571, system: 0.067, elapsed: 1.926 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.972, system: 0.293, elapsed: 13.005 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.188, system: 0.022, elapsed: 0.310 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.621, system: 0.214, elapsed: 7.331 seconds]
Computing values for grid cells...
... done. [user: 0.158, system: 0.005, elapsed: 0.348 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.032, system: 0.635, elapsed: 23.817 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.549, system: 0.048, elapsed: 3.372 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.073, system: 0.239, elapsed: 17.799 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.186, system: 0.014, elapsed: 0.259 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.643, system: 0.186, elapsed: 7.058 seconds]
Computing values for grid cells...
... done. [user: 0.164, system: 0.004, elapsed: 0.347 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.153, system: 0.517, elapsed: 29.918 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.546, system: 0.033, elapsed: 2.320 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.824, system: 0.070, elapsed: 13.422 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.179, system: 0.011, elapsed: 0.345 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.551, system: 0.163, elapsed: 6.129 seconds]
Computing values for grid cells...
... done. [user: 0.177, system: 0.015, elapsed: 0.266 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.031, system: 0.238, elapsed: 0.892 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.934, system: 0.561, elapsed: 24.501 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.419, system: 0.027, elapsed: 2.081 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.828, system: 0.064, elapsed: 14.044 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.181, system: 0.011, elapsed: 0.266 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.472, system: 0.156, elapsed: 5.996 seconds]
Computing values for grid cells...
... done. [user: 0.166, system: 0.004, elapsed: 0.276 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 9.989, system: 0.461, elapsed: 16.098 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 24.690, system: 0.748, elapsed: 39.785 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64