Last updated on 2025-08-15 01:49:03 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| CytoSimplex | 2 | 11 | |
| rliger | 5 | 2 | 6 |
Current CRAN status: NOTE: 2, OK: 11
Version: 0.2.0
Check: installed package size
Result: NOTE
installed size is 5.4Mb
sub-directories of 1Mb or more:
data 1.5Mb
libs 3.1Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: ERROR: 5, NOTE: 2, OK: 6
Version: 2.2.0
Check: examples
Result: ERROR
Running examples in ‘rliger-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: read10XH5
> ### Title: Read 10X HDF5 file
> ### Aliases: read10XH5 read10XH5Mem read10XH5Delay
>
> ### ** Examples
>
> matrix <- read10XH5(
+ filename = system.file("extdata/ctrl.h5", package = "rliger"),
+ inMemory = TRUE
+ )
> class(matrix) # Should show dgCMatrix
[1] "dgCMatrix"
attr(,"package")
[1] "Matrix"
> if (requireNamespace("HDF5Array", quietly = TRUE)) {
+ matrix <- read10XH5(
+ filename = system.file("extdata/ctrl.h5", package = "rliger"),
+ inMemory = FALSE
+ )
+ print(class(matrix)) # Should show TENxMatrix
+ }
Failed with error: ‘unused argument (quitely = TRUE)’
Error in `read10XH5Delay()`:
✖ Package HDF5Array is required for reading 10X H5 data into
DelayedArray.
ℹ Please install with `BiocManager::install('HDF5Array')`.
Backtrace:
▆
1. └─rliger::read10XH5(...)
2. └─rliger::read10XH5Delay(filename, useNames, featureMakeUniq)
3. └─cli::cli_abort(...)
4. └─rlang::abort(...)
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
plotPairwiseDEGHeatmap 7.539 0.215 8.649
createLiger 6.478 0.454 8.022
plotClusterFactorDot 4.727 0.365 6.186
plotMarkerHeatmap 4.158 0.095 5.224
Flavor: r-devel-linux-x86_64-debian-clang
Version: 2.2.0
Check: examples
Result: ERROR
Running examples in ‘rliger-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: read10XH5
> ### Title: Read 10X HDF5 file
> ### Aliases: read10XH5 read10XH5Mem read10XH5Delay
>
> ### ** Examples
>
> matrix <- read10XH5(
+ filename = system.file("extdata/ctrl.h5", package = "rliger"),
+ inMemory = TRUE
+ )
> class(matrix) # Should show dgCMatrix
[1] "dgCMatrix"
attr(,"package")
[1] "Matrix"
> if (requireNamespace("HDF5Array", quietly = TRUE)) {
+ matrix <- read10XH5(
+ filename = system.file("extdata/ctrl.h5", package = "rliger"),
+ inMemory = FALSE
+ )
+ print(class(matrix)) # Should show TENxMatrix
+ }
Failed with error: ‘unused argument (quitely = TRUE)’
Error in `read10XH5Delay()`:
✖ Package HDF5Array is required for reading 10X H5 data into
DelayedArray.
ℹ Please install with `BiocManager::install('HDF5Array')`.
Backtrace:
▆
1. └─rliger::read10XH5(...)
2. └─rliger::read10XH5Delay(filename, useNames, featureMakeUniq)
3. └─cli::cli_abort(...)
4. └─rlang::abort(...)
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
plotPairwiseDEGHeatmap 5.999 0.393 6.903
createLiger 4.242 0.484 5.408
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.2.0
Check: examples
Result: ERROR
Running examples in ‘rliger-Ex.R’ failed
The error most likely occurred in:
> ### Name: read10XH5
> ### Title: Read 10X HDF5 file
> ### Aliases: read10XH5 read10XH5Mem read10XH5Delay
>
> ### ** Examples
>
> matrix <- read10XH5(
+ filename = system.file("extdata/ctrl.h5", package = "rliger"),
+ inMemory = TRUE
+ )
> class(matrix) # Should show dgCMatrix
[1] "dgCMatrix"
attr(,"package")
[1] "Matrix"
> if (requireNamespace("HDF5Array", quietly = TRUE)) {
+ matrix <- read10XH5(
+ filename = system.file("extdata/ctrl.h5", package = "rliger"),
+ inMemory = FALSE
+ )
+ print(class(matrix)) # Should show TENxMatrix
+ }
Failed with error: ‘unused argument (quitely = TRUE)’
Error in `read10XH5Delay()`:
✖ Package HDF5Array is required for reading 10X H5 data into
DelayedArray.
ℹ Please install with `BiocManager::install('HDF5Array')`.
Backtrace:
▆
1. └─rliger::read10XH5(...)
2. └─rliger::read10XH5Delay(filename, useNames, featureMakeUniq)
3. └─cli::cli_abort(...)
4. └─rlang::abort(...)
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 2.2.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘reactome.db’
Flavor: r-oldrel-macos-arm64
Version: 2.2.0
Check: installed package size
Result: NOTE
installed size is 11.1Mb
sub-directories of 1Mb or more:
R 2.1Mb
libs 6.9Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64