phastCons7way.UCSC.hg38
This is the released version of phastCons7way.UCSC.hg38; for the devel version, see phastCons7way.UCSC.hg38.
UCSC phastCons conservation scores for hg38
Bioconductor version: Release (3.23)
Store UCSC phastCons conservation scores for the human genome (hg38) calculated from multiple alignments with other 6 vertebrate species.
Author: Robert Castelo [aut, cre]
Maintainer: Robert Castelo <robert.castelo at upf.edu>
citation("phastCons7way.UCSC.hg38")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("phastCons7way.UCSC.hg38")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual | |
| NEWS | Text |
Details
| biocViews | AnnotationData, Genetics, GenomicScores, Homo_sapiens |
| Version | 3.7.1 |
| License | Artistic-2.0 |
| Depends | R (>= 3.0.0), GenomicScores(>= 1.3.19) |
| Imports | utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb, BSgenome |
| System Requirements | |
| URL |
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Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | phastCons7way.UCSC.hg38_3.7.1.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Package Short Url | https://bioconductor.org/packages/phastCons7way.UCSC.hg38/ |
| Package Downloads Report | Download Stats |