qualityDiagnostics {arrayMagic} | R Documentation |
Several quality diagnostic plots are generated.
The distributions of the (normalised) intensities,
as well as overall similarities between hybridisations and
several other quality parameters are graphically visualised
(cf. function qualityParameters
).
qualityDiagnostics(arrayDataObject, exprSetRGObject, qualityParametersList, slideNameColumn, savePath=".", completeOutput=FALSE, verbose=TRUE, plotOutput="pdf")
arrayDataObject |
arrayData-class ;
required; default: missing |
exprSetRGObject |
exprSetRG-class ;
required, default: missing |
qualityParametersList |
the return value of
qualityParameters
required; default: missing |
slideNameColumn |
character string; optional; default: missing;
specifies a column of
pDataSlide(exprSetRGObject) . |
savePath |
character string; required; default: "." |
completeOutput |
required; default: FALSE |
verbose |
logical; required; default: TRUE |
plotOutput |
character string specifying the output type; either "screen", "pdf" or "win.metafile"; default: "pdf" |
The function is called for its side effect.
Andreas Buness <a.buness@dkfz.de>
qualityParameters
,
exprSetRG-class
,
arrayData-class