hgu133a.pdnn.params {affypdnn} | R Documentation |
Chip-type specific data structure.
data(hgu95av2.pdnn.params)
The format is a list:
These chip-specific data structures are generated from the data files
made available by the author of the PDNN paper (see the section source). They
are stored as data
to save some computation time.
The data structures were made using the function
pdnn.params.chiptype
. The data files are included in the
the directory `data' of the package.
To lower the size of the package, the only chip-specific data structures included in the package is the one for HG-U95Av2.
Li Zhang, Michael F. Miles and Kenneth D. Aldape - A model of molecular interactions on short oligonucleotide arrays, 2003, Nature Biotech., vol. 21, n.7
## give the path the original energy parameter files included in the package list.files(system.file("exampleData", package="affypdnn"), "^pdnn-energy-parameter_", full.names=TRUE)