SPPkgBuilder {AnnBuilder} | R Documentation |
Given the URL to Swiss-Prot protein data, this function creates a data package with the data stored as R environment objects in the data directory
SPPkgBuilder(pkgPath, version, author, fromWeb = TRUE, url = "ftp://ftp.ebi.ac.uk/pub/databases/swissprot/release/sprot41.dat") getDetailV(key) getEnvNames() isOneToOne(envName)
pkgPath |
pkgPath a character string for the path where
the data package created will be stored |
version |
version a character string for the version
number of the data package to be created |
author |
author a list with an author elementfor the name
of the author of the data package and a maintainer element for the
name and email address of the maintainer of the dat package to be
created |
fromWeb |
fromWeb a boolean indicating whether the data
will be read from the internet or locally |
url |
url an URL of file name to read the data from |
key |
key a character string for the name of Swiss-Prot
annotation element, e. g. "Swiss-Prot accession number" |
envName |
envName a character string for the name of an
environment object |
If fromWeb
is FALSE, url will be the file name of a local file.
This function returns NULL
This function is part of the Bioconductor project at Dana-Farber Cancer Institute to provide bioinformatics functionalities through R
Jianhua Zhang
ftp://ftp.ebi.ac.uk/pub/databases/swissprot/release/sprot41.dat