KEGGPkgbuilder {AnnBuilder}R Documentation

A function to make the data package for KEGG

Description

This function generates a data package with rda files mapping KEGG pathway or enzyme names to ids and vice versa. The source files for making the mapping are from the Internet.

Usage

KEGGPkgBuilder(pkgPath, pkgName = "KEGG", version = "1.0.1", 
author = list(author = "who",maintainer = "who@email.com"))
getEIdNName(enzymeURL)
getKEGGFile(whichOne, organism = "hsa")
getKEGGGeneMap(organism = "Homo sapiens"))

Arguments

pkgPath A character string for the name of path to which the data package will be stored.
pkgName A character string for the name of the data package.
version A character string for the version number of the system by which the data package is generated.
author A list of character strings with one element being name for the name of the author and another being address being the email address of the author
organism organism a character string for the name of the organism of interest
whichOne A charcter string for the name of file type. Valid values include "path" or "enzyme"
enzymeURL A character string for the URL from which the source file for enzyme data will be downloaded.

Details

The data package produced will have the normal structure of an R package (i. g. with R, man, data, and src directories) under a directory defined by pkgName under pkgPath.

Value

This function does not return any value.

Note

This function is part of the Bioconductor project at Dana-Farber Cancer Institute to provide Bioinformatics functionalities through R.

Author(s)

Jianhua Zhang

References

An Introduction to R - Writting R Extensions.

See Also

package.skeleton


[Package AnnBuilder version 1.5.31 Index]