checkfit |
Check goodness-of-fit of GaGa and MiGaGa models |
classpred |
Predict the class that a new sample belongs to. |
dcgamma |
Approximate gamma shape distribution |
findgenes |
Find differentially expressed genes after GaGa fit. |
fit.gg |
Fit GaGa hierarchical model |
getpar |
Extract hyper-parameter estimates from a gagafit object |
mcgamma |
Approximate gamma shape distribution |
parest |
Parameter estimates and posterior probabilities of differential expression for GaGa and MiGaGa model |
powclasspred |
Expected probability that a future sample is correctly classified. |
print.gagafit |
Print an object of class gagafit |
rcgamma |
Approximate gamma shape distribution |
sim.gg |
Prior predictive simulation |
simnewsamples |
Posterior predictive simulation |