gene.to.exon.probeset {exonmap} | R Documentation |
The functions create a tabular report of all the exons and probesets within input genes.
gene.to.exon.probeset (genes, mt=FALSE, probes.min=4) gene.to.exon.probeset.expr (x, genes, mt=FALSE, probes.min=4)
x |
eSet object containing expression data |
genes |
List of Ensembl genes to translate into exons and probesets |
probes.min |
Only return probesets that hit the genome with at least this number of probes |
mt |
If TRUE, return multitarget probesets (i.e. those that match more than once to the genome) |
A data.frame containing all the exons, probesets, genes and gene symbol - in case of gene.to.exon.probeset.expr also with relevant expression data. Filters out probesets that hit to the genome more than once.
Michal Okoniewski
http://bioinformatics.picr.man.ac.uk/
## Not run: report <- gene.to.exon.probeset(c("ENSG00000175793","ENSG00000090273")); report.expr <- gene.to.exon.probeset.expr(x.rma, c("ENSG00000175793","ENSG00000090273")); ## End(Not run)