splicing.index {exonmap}R Documentation

Calculate the splicing index

Description

Has been replaced by the function si.

Usage

splicing.index(x, genes, group, members, median.gene=TRUE, vector.out=TRUE, by.chip=FALSE)

Arguments

x eSet containing expression data
genes Character vector of Ensembl gene names
members The two sets of arrays to compare
group Column name in the eSet's pData object in which to look for members
median.gene Use the median instead of the mean when calculating averages
vector.out Return a single vector of values
by.chip If TRUE calculate gene level means per array

Details

This has been replaced by si.

Value

The splicing index.

Author(s)

Michal J Okoniewski, Crispin J Miller

References

http://bioinformatics.picr.man.ac.uk/

See Also

splanova

Examples

 
  #See the function si()

[Package exonmap version 1.6.06 Index]