makeTable {VanillaICE}R Documentation

Makes a table of summary statistics for the breakpoints

Description

Calculate summary statistics of the breakpoints (mean, median, sd) for each chromosome. The average, median, and sd are also computed across chromosomes.

Usage

makeTable(object, state, by, unit = 1000, digits = 3)

Arguments

object object of class HmmPredict
state a character string for the hidden state to make the summary table of
by not useful at this point. Eventually would be nice to split by sample as well as by chromosome
unit numeric. For kb, set unit = 1000. For Mb, set unit = 1e6, etc.
digits for rounding

Value

matrix

Author(s)

R. Scharpf

See Also

summary

Examples

data(fit)
makeTable(fit, state="D")

[Package VanillaICE version 1.2.0 Index]