makeTable {VanillaICE} | R Documentation |
Calculate summary statistics of the breakpoints (mean, median, sd) for each chromosome. The average, median, and sd are also computed across chromosomes.
makeTable(object, state, by, unit = 1000, digits = 3)
object |
object of class HmmPredict |
state |
a character string for the hidden state to make the summary table of |
by |
not useful at this point. Eventually would be nice to split by sample as well as by chromosome |
unit |
numeric. For kb, set unit = 1000. For Mb, set unit = 1e6, etc. |
digits |
for rounding |
matrix
R. Scharpf
data(fit) makeTable(fit, state="D")