injectHardMask {Biostrings}R Documentation

Injecting a hard mask in a sequence

Description

[TODO]

Usage

  injectHardMask(x, letter="+")

Arguments

x A MaskedXString or XStringViews object.
letter A single letter.

Value

An XString object of the same length as the orignal object x if x is a MaskedXString object, or of the same length as subject(x) if it's an XStringViews object.

Author(s)

H. Pages

See Also

replaceLetterAtLoc, chartr, XString, XStringViews-class, MaskedXString-class

Examples

  mask0 <- Mask(mask.width=29, start=c(3, 10, 25), width=c(6, 8, 5))
  x <- DNAString("ACACAACTAGATAGNACTNNGAGAGACGC")
  masks(x) <- mask0
  x
  injectHardMask(x)

[Package Biostrings version 2.8.18 Index]