BSgenomeForge {BSgenome}R Documentation

The BSgenomeForge functions

Description

The BSgenomeForge functions are intended to be used for making "Biostring-based genome data packages" (aka "BSgenome packages") like the BSgenome.Hsapiens.UCSC.hg18 package. They are not intended to be used by "regular" users of these packages.

There are currently two BSgenomeForge functions: forgeSeqFiles and forgeMaskFiles.

Usage

  forgeSeqFiles(srcdir, destdir, names, prefix="", suffix="",
                comments=NULL, single.seq=TRUE)
  forgeMaskFiles(srcdir, destdir, seqnames, seqdir,
                 masks_per_seq, agp_or_gap, prefix=NA, suffix=NA)

Arguments

srcdir [TODO: Document me]
destdir [TODO: Document me]
names [TODO: Document me]
prefix [TODO: Document me]
suffix [TODO: Document me]
comments [TODO: Document me]
single.seq [TODO: Document me]
seqnames [TODO: Document me]
seqdir [TODO: Document me]
masks_per_seq [TODO: Document me]
agp_or_gap [TODO: Document me]

Author(s)

H. Pages


[Package BSgenome version 1.8.4 Index]