injectSNPs {BSgenome}R Documentation

injectSNPs

Description

Inject SNPs from a package of SNP locations into a genome.

Usage

  injectSNPs(bsgenome, SNPlocs_pkgname)
  available.SNPs()

Arguments

bsgenome [TODO]
SNPlocs_pkgname [TODO]

Details

[TODO]

Value

[TODO]

Author(s)

H. Pages

See Also

BSgenome-class

Examples

  ## Look at the SNP locations packages currently available:
  available.SNPs()

  if (interactive()) {
    ## Make your choice and install with:
    source("http://bioconductor.org/biocLite.R")
    biocLite("SNPlocs.Hsapiens.dbSNP.20071016")

    ## Inject into the Human genome:
    library(BSgenome.Hsapiens.UCSC.hg18)
    Hsapiens
    HsWithSNPs <- injectSNPs(Hsapiens, "SNPlocs.Hsapiens.dbSNP.20071016")
    HsWithSNPs
    alphabetFrequency(Hsapiens$chr1)
    alphabetFrequency(HsWithSNPs$chr1)
  }

[Package BSgenome version 1.8.4 Index]