Model-class {rsbml}R Documentation

SBML type "Model"

Description

The central SBML element. Contains the Species, Reactions, Compartments and other components of the model. See the SBML specification, at the reference, for further details.

Instantiation

Objects can be created by calls of the form new("Model", ...).

Slots

id:
Object of class "character" uniquely identifying this component.
name:
Object of class "character" naming this component.
functionDefinitions:
Object of class "list" containing FunctionDefinitions.
unitDefinitions:
Object of class "list" containing UnitDefinitions.
compartments:
Object of class "list" containing Compartments.
species:
Object of class "list" containing Speciess.
parameters:
Object of class "list" containing Parameters.
rules:
Object of class "list" containing Rules.
reactions:
Object of class "list" containing Reactions.
events:
Object of class "list" containing Events.
layouts:
Object of class "list" containing Layouts.
speciesTypes:
Object of class "list" containing SpeciesTypes.
compartmentTypes:
Object of class "list" containing CompartmentTypes.
constraints:
Object of class "list" containing Constraints.
initialAssignments:
Object of class "list" containing InitialAssignments.

Methods

id
signature(object = "Model"): gets the id slot
id<-
signature(object = "Model"): sets the id slot
name
signature(object = "Model"): gets the name slot
name<-
signature(object = "Model"): sets the name slot
compartments
signature(object = "Model"): gets the compartments slot
compartments<-
signature(object = "Model"): sets the compartments slot
events
signature(object = "Model"): gets the events slot
events<-
signature(object = "Model"): sets the events slot
functionDefinitions
signature(object = "Model"): gets the functionDefinitions slot
functionDefinitions<-
signature(object = "Model"): sets the functionDefinitions slot
layouts
signature(object = "Model"): gets the layouts slot
layouts<-
signature(object = "Model"): sets the layouts slot
parameters
signature(object = "Model"): gets the parameters slot
parameters<-
signature(object = "Model"): sets the parameters slot
species
signature(object = "Model"): gets the species slot
species<-
signature(object = "Model"): sets the species slot
reactions
signature(object = "Model"): gets the reactions slot
reactions<-
signature(object = "Model"): sets the reactions slot
rules
signature(object = "Model"): gets the rules slot
rules<-
signature(object = "Model"): sets the rules slot
unitDefinitions
signature(object = "Model"): gets the unitDefinitions slot
unitDefinitions<-
signature(object = "Model"): sets the unitDefinitions slot
compartmentTypes
signature(object = "Model"): gets the compartmentTypes slot
compartmentTypes<-
signature(object = "Model"): sets the compartmentTypes slot
constraints
signature(object = "Model"): gets the constraints slot
constraints<-
signature(object = "Model"): sets the constraints slot
initialAssignments
signature(object = "Model"): gets the initialAssignments slot
initialAssignments<-
signature(object = "Model"): sets the initialAssignments slot
speciesTypes
signature(object = "Model"): gets the speciesTypes slot
speciesTypes<-
signature(object = "Model"): sets the speciesTypes slot

Author(s)

Michael Lawrence

References

http://sbml.org/documents/


[Package rsbml version 1.4.0 Index]