Classes for high-throughput SNP arrays

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Documentation for package ‘oligoClasses’ version 1.0.3

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AffySNPCNVPDInfo-class Class "DBPDInfo"
AffySNPPDInfo-class Class "DBPDInfo"
calls Accessors for SnpCallSet
calls,oligoSnpSet-method Methods for oligoSnpSet class
calls,SnpCallSet-method Accessors for SnpCallSet
calls,SnpLevelSet-method SnpLevelSet class
calls<-,oligoSnpSet,matrix-method Methods for oligoSnpSet class
calls<-,SnpCallSet,matrix-method Accessors for SnpCallSet
calls<-,SnpLevelSet,matrix-method SnpLevelSet class
callsConfidence Accessors for SnpCallSet
callsConfidence,oligoSnpSet-method Methods for oligoSnpSet class
callsConfidence,SnpCallSet-method Accessors for SnpCallSet
callsConfidence,SnpLevelSet-method SnpLevelSet class
callsConfidence<-,oligoSnpSet,matrix-method Methods for oligoSnpSet class
callsConfidence<-,SnpCallSet,matrix-method Accessors for SnpCallSet
callsConfidence<-,SnpLevelSet,matrix-method SnpLevelSet class
cnConfidence Accessors for SnpCopyNumberSet objects
cnConfidence,oligoSnpSet-method Methods for oligoSnpSet class
cnConfidence,SnpCopyNumberSet-method Accessors for SnpCopyNumberSet objects
cnConfidence,SnpLevelSet-method SnpLevelSet class
cnConfidence<-,oligoSnpSet,matrix-method Methods for oligoSnpSet class
cnConfidence<-,SnpCopyNumberSet,matrix-method Accessors for SnpCopyNumberSet objects
cnConfidence<-,SnpLevelSet,matrix-method SnpLevelSet class
copyNumber Accessors for SnpCopyNumberSet objects
copyNumber,oligoSnpSet-method Methods for oligoSnpSet class
copyNumber,SnpCopyNumberSet-method Accessors for SnpCopyNumberSet objects
copyNumber,SnpLevelSet-method SnpLevelSet class
copyNumber<-,oligoSnpSet,matrix-method Methods for oligoSnpSet class
copyNumber<-,SnpCopyNumberSet,matrix-method Accessors for SnpCopyNumberSet objects
copyNumber<-,SnpLevelSet,matrix-method SnpLevelSet class
DBPDInfo-class Class "DBPDInfo"
ExonFeatureSet-class "FeatureSet" Extensions
ExpressionFeatureSet-class "FeatureSet" Extensions
FeatureSet-class Classes for Feature level data
initialize,oligoSnpSet-method Methods for oligoSnpSet class
initialize,SnpCallSet-method "SnpSet" Extensions
initialize,SnpCallSetPlus-method Class "SnpCallSetPlus"
initialize,SnpCnvCallSetPlus-method Class "SnpCallSetPlus"
initialize,SnpCopyNumberSet-method "SnpSet" Extensions
oligoSnpSet-class Methods for oligoSnpSet class
PDInfo-class Classes "PDInfo" and "SNPPDInfo"
platformDesign-class Class "platformDesign"
QuantificationSet-class Class "QuantificationSet"
SnpCallSet-class "SnpSet" Extensions
SnpCallSet-methods "SnpSet" Extensions
SnpCallSetPlus-class Class "SnpCallSetPlus"
SnpCnvCallSetPlus-class Class "SnpCallSetPlus"
SnpCnvFeatureSet-class Class "SnpCnvFeatureSet"
SNPCNVPDInfo-class Classes "PDInfo" and "SNPPDInfo"
SnpCnvQSet-class Class "SnpCnvQSet"
SnpCopyNumberSet-class "SnpSet" Extensions
SnpCopyNumberSet-methods "SnpSet" Extensions
SnpFeatureSet-class "FeatureSet" Extensions
SnpLevelSet-class SnpLevelSet class
SNPPDInfo-class Classes "PDInfo" and "SNPPDInfo"
SnpQSet-class Class "SnpQSet"
TilingFeatureSet-class "FeatureSet" Extensions