read.gatingML {flowUtils}R Documentation

Function to parse xml gating file into a structured filter

Description

Parsing Gating-ML into a structured filter.

Usage

read.gatingML(file,...)

Arguments

file xml file describing a gate
... additional arguments that are passed to the methods

Details

The Gating-ML specification has been developed as an interchange format for the description of gates relevant to a flow cytometry experiment. Presently, we can read version 1.3 of the specification, which was the most recent at the time of this writing. When used in conjunction with Compensation-ML and Transformation-ML, this specification can

Value

A filterSet-class object containing all of the filters defined in the specified file. Structured filter of class as defined in the flowCore package.

Author(s)

B. Ellis

References

~put references to the literature/web site here ~

See Also

filterSet-class

Examples


EGate <-read.gatingML(system.file("xml",
        "EllipsoidGates.xml", package="flowUtils"))

[Package flowUtils version 0.4.0 Index]