probesets.in.range {exonmap}R Documentation

Find probesets, transcripts, exons and genes by location

Description

Given a start and end point, a strand, and a chromosome, find the probesets that hit within that region / any genes that occur there.

Usage

probesets.in.range(start, stop, strand, chr)
exons.in.range(start, stop, strand, chr)
transcripts.in.range(start, stop, strand, chr)
genes.in.range(start, stop, strand, chr)
probes.only.in.range(start, stop, strand, chr)

Arguments

start Beginning of the region on a chromosome
stop End of the region on a chromosome
strand 1 is forward strand, -1 is reverse strand
chr Chromosome name - should be a character

Details

Value

Returns all the probesets/genes that match to a given genomic region.

Author(s)

Michal Okoniewski

References

http://bioinformatics.picr.man.ac.uk/

Examples

 
  ## Not run: 
   probesets <- probesets.in.range(80000,1600000,1,"1");
   exonics <- select.probewise( probesets , filter="exonic")

## End(Not run)

[Package exonmap version 1.4.3 Index]