calculateLOH {beadarraySNP} | R Documentation |
Using pairings of normal and tumor samples the LOH pattern is determined
calculateLOH(object, grouping, NorTum = "NorTum", ...)
object |
SnpSetIllumina object |
grouping |
Factor to show which samples belong together (are of the same individual) |
NorTum |
character vector or factor. Elements containing "N" are considered to be the normal sample |
... |
extra arguments for link{heterozygousSNPs} |
~~ If necessary, more details than the description above ~~
SnpSetIllumina object with loh
and nor.gt
matrices in assayData.
loh
is a logical matrix, and nor.gt
is a character matrix containing
the genotypes of the corresponding normal sample
Jan Oosting