interactiveCNselect {beadarraySNP}R Documentation

Interactive assignment of copynumbers to genomic segments

Description

This function plots the genomic view of a sample, and allows the assignment of a discrete copy number to each segment

Usage

interactiveCNselect(object, sample = 1, dnaIndex)

Arguments

object class SnpSetIllumina after segmentation
sample Sample identifier within object
dnaIndex numeric, measured DNA index of the sample (1=normal)

Details

Value

list, see createCNSummary

Author(s)

Jan Oosting

See Also

segmentate, alterCN, plotGoldenGate4OPA createCNSummary


[Package beadarraySNP version 1.4.0 Index]