calculateLOH {beadarraySNP}R Documentation

Determine LOH in experiment

Description

Using pairings of normal and tumor samples the LOH pattern is determined

Usage

calculateLOH(object, grouping, NorTum = "NorTum", ...)

Arguments

object SnpSetIllumina object
grouping Factor to show which samples belong together (are of the same individual)
NorTum character vector or factor. Elements containing "N" are considered to be the normal sample
... extra arguments for link{heterozygousSNPs}

Details

~~ If necessary, more details than the description above ~~

Value

SnpSetIllumina object with loh and nor.gt matrices in assayData. loh is a logical matrix, and nor.gt is a character matrix containing the genotypes of the corresponding normal sample

Author(s)

Jan Oosting

See Also

SnpSetIllumina-class

Examples






[Package beadarraySNP version 1.4.0 Index]