oGtypeExSet-class {GGtools} | R Documentation |
Experimental class for combining oligo SnpCallSet with ExpressionSet
Objects can be created by calls of the form new("oGtypeExSet",
snpCalls=list(), dbConns=list(), x)
where x
is an ExpressionSet
instance.
snpCalls
:"list"
named
list of SnpCallSet
instances dbConns
:"list"
list
of SQLite connections for SNP annotation structures assayData
:"AssayData"
from expression data phenoData
:"AnnotatedDataFrame"
~~ featureData
:"AnnotatedDataFrame"
~~ experimentData
:"MIAME"
~~ annotation
:"character"
~~ .__classVersion__
:"Versions"
~~
Class ExpressionSet-class
, directly.
Class eSet-class
, by class "ExpressionSet", distance 2.
Class VersionedBiobase-class
, by class "ExpressionSet", distance 3.
Class Versioned-class
, by class "ExpressionSet", distance 4.
No methods defined with class "oGtypeExSet" in the signature.
addAnno, getSNPindices, and tx.rsnum need further development.
VJ Carey <stvjc@channing.harvard.edu>
# use new("oGtypeExSet", snpCalls=list(Nsp=nspCalls, Sty=styCalls), # dbConns=list(), x3pSet) showClass("oGtypeExSet")