oGtypeExSet-class {GGtools}R Documentation

Class "oGtypeExSet" ~~~

Description

Experimental class for combining oligo SnpCallSet with ExpressionSet

Objects from the Class

Objects can be created by calls of the form new("oGtypeExSet", snpCalls=list(), dbConns=list(), x) where x is an ExpressionSet instance.

Slots

snpCalls:
Object of class "list" named list of SnpCallSet instances
dbConns:
Object of class "list" list of SQLite connections for SNP annotation structures
assayData:
Object of class "AssayData" from expression data
phenoData:
Object of class "AnnotatedDataFrame" ~~
featureData:
Object of class "AnnotatedDataFrame" ~~
experimentData:
Object of class "MIAME" ~~
annotation:
Object of class "character" ~~
.__classVersion__:
Object of class "Versions" ~~

Extends

Class ExpressionSet-class, directly. Class eSet-class, by class "ExpressionSet", distance 2. Class VersionedBiobase-class, by class "ExpressionSet", distance 3. Class Versioned-class, by class "ExpressionSet", distance 4.

Methods

No methods defined with class "oGtypeExSet" in the signature.

Note

addAnno, getSNPindices, and tx.rsnum need further development.

Author(s)

VJ Carey <stvjc@channing.harvard.edu>

Examples

# use new("oGtypeExSet", snpCalls=list(Nsp=nspCalls, Sty=styCalls),
#    dbConns=list(), x3pSet)
showClass("oGtypeExSet")

[Package GGtools version 1.6.1 Index]