oneChannelGUI-package | Set of functions extending the capability of affylmGUI package |
AboutaffylmGUI | Starting oneChannelGUI package |
AboutextendedaffylmGUI | Starting oneChannelGUI package |
addAnnLib | Starting oneChannelGUI package |
affyPLMHelp | Starting oneChannelGUI package |
affyPlotMA | Starting oneChannelGUI package |
AptMidas | Graphical interface to APT midas |
changeMenu | Starting oneChannelGUI package |
ComputeContrasts | Starting oneChannelGUI package |
ComputeLinearModelFit | Starting oneChannelGUI package |
crosshybFilter | Removing from exon array gene/exon level probe sets characterized by cross hybridization with other transcripts |
crosshybhuex10stv2na22hg18 | Cross hybriduzation data for exon CORE subset of human exon array 1.0 ST |
crosshybmoex10stv1na22mm8 | Cross hybriduzation data for exon CORE subset of mouse exon array 1.0 ST |
crosshybraex10stv1na22rn4 | Cross hybriduzation data for exon CORE subset of rat exon array 1.0 ST |
dabgFilter | Starting oneChannelGUI package |
delete.ML | Starting oneChannelGUI package |
dfMAplot | MA and Volcano plots from data present in a limma derived topTable |
erankProdAltSpl | Implementation of the Rank Product method for the detection of alternative splicing events |
erankProdAltSplFilter | Filtering Rank Product results for the detection of alternative splicing events |
ExportNormalizedExpressionValues | Starting oneChannelGUI package |
ExportNormalizedExpressionValues1 | Starting oneChannelGUI package |
extractAffyids | Extracting probe ids associated to a specific Gene Ontology term |
filteringTable | Filtering a tab delimited file |
genefilterHelp | Starting oneChannelGUI package |
geoVSbioc | linking GEO platforms to available BioC annotations libraries |
GetNormalizationMethod | Starting oneChannelGUI package |
GOenrichment | Searching for Gene Ontology enriched terms within a set of differentially expressed genes |
GOstatsHelp | Starting oneChannelGUI package |
huex10stv2na22hg18 | Annotation data for CORE subset of human exon array 1.0 ST |
initialize.extAffylmGUI | Starting oneChannelGUI package |
inspecting.one.splice.index | Plotting on the profiles of splice indexes for a transcript cluster ID |
inspecting.splice.index | Plotting on a pdf file the profiles of splice indexes |
intensityFilter | intensity filtering with a mouse click |
intronicBg | Starting oneChannelGUI package |
IPAlistFilter | Filtering an expression set using a set of Entrez genes extracted from Ingenuity Pathways analysis (IPA) |
iqrFilter | Interquantile filtering with a mouse click |
largedatasetNorm | Starting oneChannelGUI package |
libraryFilesDir | Starting oneChannelGUI package |
listFilter | Subsetting an expression set using a list of Affymetrix ids |
masigpro | The function executes maSigPro analysis |
masigpro.edesign | The function creates an edesign object needed to run maSigPro |
masigpro.view | The function allows the visualization of maSigPro results |
maSigProHelp | Starting oneChannelGUI package |
midasFilter | Starting oneChannelGUI package |
ML.edesign | The function creates an data frame containing the parameters useful for class prediction |
moex10stv1na22mm8 | Annotation data for CORE subset of mouse exon array 1.0 ST |
myExpresso | Running the affy expresso function with the widget |
NewLimmaFile | Starting oneChannelGUI package |
NormalizeNow | Starting oneChannelGUI package |
ocPlotHist | Gene/Exon level density plots |
ocPlotPCA | Gene/Exon level density plots |
oneChannelGUI | Set of functions extending the capability of affylmGUI package |
oneChannelGUI.start | Starting oneChannelGUI package |
oneChannelGUIHelp | Starting oneChannelGUI package |
OpenAFile | Starting oneChannelGUI package |
OpenAGeoFile | Starting oneChannelGUI package |
OpenALimmaFile | Starting oneChannelGUI package |
OpenCDFandTargetsfiles | Starting oneChannelGUI package |
OpenExonandTargetsfiles | Starting oneChannelGUI package |
OpenExonFile | Starting oneChannelGUI package |
OpenExonProbeFile | Starting oneChannelGUI package |
OpenGeoFile | Starting oneChannelGUI package |
OpenGeoFiles | Starting oneChannelGUI package |
OpenLargeFile | Starting oneChannelGUI package |
OpenLargefiles | This function loads large data set made from tab delimited files |
OpenLimmaFile | Starting oneChannelGUI package |
pamrHelp | Starting oneChannelGUI package |
pdmclassHelp | Starting oneChannelGUI package |
plierToZero | Setting to 0 low log2 intensity values generated with plier |
plotGO | Plotting parents of a GO term with few mouse click |
PlotOptionsv1 | A modified version of the function used in affyPLM library |
raex10stv1na22rn4 | Annotation data for CORE subset of rat exon array 1.0 ST |
rankProd | graphical interface to rank product method implemented in RankProd Bioconductor library. |
RankProdHelp | Starting oneChannelGUI package |
rawpCheck | Raw p-value distribution from limma analysis by a mouse click |
recoverUnfiltered | Starting oneChannelGUI package |
reviqrFilter | Reverse interquantile filtering with a mouse click |
sample.size.evaluation | The function executes and plots results from ssize and delta fulction from the ssize packahe |
sample.size.evaluation1 | The function executes functions from the sizepower packahe |
SaveAsLimmaFile | Starting oneChannelGUI package |
showDataset | Grabbing info about the available expression set |
showTopTable | Modification of the function immplemented in affylmGUI to generate a topTable |
siggenes | The function executes SAM analysis implemented in siggenes bioconductor library |
siggenesHelp | Starting oneChannelGUI package |
simFilter | This function allows filtering on the basis of the average splice index mean difference between two groups |
sizepowerHelp | Starting oneChannelGUI package |
spliceIndex | This function coverts the exon intenisty data in a slice index |
ssizeHelp | Starting oneChannelGUI package |
targetWidget | Widget to create a target file to load .CEL files |
templA | Generating a template A to be uploaded in Ingenuity Pathways analysis (IPA) |
trainTest | Creating a training set and a test set by a mouse click |
VennDiagram | Venn diagrams using two or three lists |
whichKindOfArray | Starting oneChannelGUI package |