getGO {biomaRt} | R Documentation |
This function retrieves GO information from Ensembl given a gene identifier
getGO( id, type, mart)
id |
gene identifier |
type |
type of identifier, possible values can be obtained by the listFilters function. Examples are entrezgene, hgnc_symbol (for hugo gene sy mbol), ensembl_gene_id, unigene, agilentprobe, affy_hg_u133_plus_2, refseq_dna, etc. |
mart |
object of class Mart, containing connections to the BioMart databases. You can create such an object using the function useMart. |
Steffen Durinck
if(interactive()){ mart <- useMart("ensembl", dataset="hsapiens_gene_ensembl") #example using affy id go = getGO( id = "1939_at", type = "affy_hg_u95av2", mart = mart) show(go) #example using entrezgene id go = getGO( id = 672, type = "entrezgene", mart = mart) show(go) }