Interface to BioMart databases (e.g. Ensembl, Wormbase, Gramene and Uniprot)


[Package List] [Top]

Documentation for package `biomaRt' version 1.10.1

User Guides and Package Vignettes

Read overview or browse directory.

Help Pages

attributeSummary Gives a summary of the attributes groups and categories
exportFASTA Exports getSequence results to FASTA format
filterSummary Gives a summary of the filters groups and categories
getAffyArrays Displays affy identifiers of Affymetrix chips supported by the Ensembl package
getBM Retrieves information from the BioMart database
getFeature Retrieves identifiers starting from a gene symbol, chromosomal position or GO identifier
getGene Retrieves gene annotation information
getGO Retrieves GO information
getHomolog Get homologs
getLDS Retrieves information from two linked datasets
getSequence Retrieves sequences
getSNP Retrieves SNP's between a given chromosome start and end position
listAttributes lists the attributes available in the selected dataset
listDatasets lists the datasets available in the selected BioMart database
listFilters lists the filters available in the selected dataset
listMarts list the BioMart database covered by biomaRt package
Mart-class Class Mart
martDisconnect Disconnects from BioMarts
martTable-class Class martTable
parseAttributes parse attributes
parseFilters parse filters
useDataset Select a dataset to use and updates Mart object
useMart Connects to the selected BioMart