boxplotBeads {beadarray}R Documentation

Box plot of bead intensities

Description

Function to produce box plots of the bead intensities from different bead arrays

Usage

boxplotBeads(BLData, whatToPlot = "G", arrays = NULL, log = TRUE,
          varwidth = TRUE, ...)

Arguments

BLData a BeadLevelList object
whatToPlot character string specifying which intensities to plot. Possibilities are "G", "Gb" for single channel data and "G", "Gb", "R" and "Rb" for two-colour data
arrays numeric vector of arrays to plot
log if TRUE log2 intensities are plotted
varwidth logial, indicating whether box widths should be proportional to the number of values in each box plot
... further graphical parameters to boxplot function from graphics package

Details

Produces box plots or the raw intensities from a bead array

Value

Plot is produced on current graphical device

Author(s)

Matt Ritchie

Examples

data(BLData)

boxplotBeads(BLData)

[Package beadarray version 1.4.0 Index]