BeadLevelList-class {beadarray} | R Documentation |
A class for storing red and green channel foreground and background intensities from an Illumina experiment.
Objects can be created by calls of the form new("BeadLevelList")
, but are usually created by readIllumina
.
Objects of this class contain the following slots
beadData : | an environment for storing the raw bead-level data. Each item stored in beadData is a data.frame which can be accessed by BLData[[1]] . Each row correspond to a bead and columns the data. |
phenoData : | an 'AnnotatedDataFrame' containing experimental information. |
arrayInfo : | a list containing array information. |
beadAnno : | a data.frame containing Bead annotation information. |
scanMetrics : | a data.frame containing scanner information. |
signature(.Object = "BeadLevelList")
copyBeadLevelList(object)
BeadLevelList
objectarrayNames(object)
BeadLevelList
objectcombineBeadLevelLists(object1,object2)
BeadLevelList
objects into onegetArrayData(object,which="G",log=TRUE)
which
intensities on the log
scale from the
BeadLevelList
numBeads(object)
pData(object)
phenoData(object)
Mark Dunning