Merge Maid


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Documentation for package `MergeMaid' version 2.8.0

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AverageDuplicates Merge gene expression data sets
check Merge gene expression data sets
check.length Class mergeCoeff, a class for storing regression coefficients.
coeff Class mergeCoeff, a class for storing regression coefficients.
coeff,mergeCoeff-method Class mergeCoeff, a class for storing regression coefficients.
coeff<-,mergeCoeff-method Class mergeCoeff, a class for storing regression coefficients.
exprs,mergeExpressionSet-method Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
exprs<-,mergeExpressionSet,ANY-method Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
geneNames,mergeExpressionSet-method Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
geneNames<-,mergeExpressionSet,ANY-method Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
geneStudy Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
geneStudy,mergeExpressionSet-method Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
geneStudy<-,mergeExpressionSet-method Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
hist Class mergeCor, a class for storing data relevant to integrative correlation coefficients.
hist,mergeCor-method Class mergeCor, a class for storing data relevant to integrative correlation coefficients.
intCor Correlation of Correlations
intCor,mergeExpressionSet-method Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
intcorDens plot of density functions of integrative correlations
intcorDens,mergeExpressionSet-method Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
integrative.cors Class mergeCor, a class for storing data relevant to integrative correlation coefficients.
integrative.cors,mergeCor-method Class mergeCor, a class for storing data relevant to integrative correlation coefficients.
intersection ExpressionSet with all common genes in a mergeExpressionSet
intersection,mergeExpressionSet-method Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
isna Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
length,mergeExpressionSet-method Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
maxcors Class mergeCor, a class for storing data relevant to integrative correlation coefficients.
maxcors,mergeCor-method Class mergeCor, a class for storing data relevant to integrative correlation coefficients.
maxintcor Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
mergeCoeff Class mergeCoeff, a class for storing regression coefficients.
mergeCoeff-class Class mergeCoeff, a class for storing regression coefficients.
mergeCor Class mergeCor, a class for storing data relevant to integrative correlation coefficients.
mergeCor-class Class mergeCor, a class for storing data relevant to integrative correlation coefficients.
mergeData MergeMaid instance data for merging
mergeExpressionSet Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
mergeExpressionSet-class Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
mergeExprs Merge gene expression data sets
mergeget Merge gene expression data sets
modelOutcome Compare regression coefficients across studies
modelOutcome,mergeExpressionSet-method Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
names,mergeExpressionSet-method Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
names<-,mergeExpressionSet-method Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
notes,mergeCor-method Class mergeCor, a class for storing data relevant to integrative correlation coefficients.
notes,mergeExpressionSet-method Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
notes<-,mergeExpressionSet,ANY-method Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
pairwise.cors Class mergeCor, a class for storing data relevant to integrative correlation coefficients.
pairwise.cors,mergeCor-method Class mergeCor, a class for storing data relevant to integrative correlation coefficients.
phenoData,mergeExpressionSet-method Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
phenoData<-,mergeExpressionSet,ANY-method Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
plot Class mergeCor, a class for storing data relevant to integrative correlation coefficients.
plot,list-method Class mergeCor, a class for storing data relevant to integrative correlation coefficients.
plot,mergeExpressionSet-method Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
sample1 MergeMaid instance data for merging
sample2 MergeMaid instance data for merging
sample3 MergeMaid instance data for merging
show,mergeExpressionSet-method Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
stdcoeff Class mergeCoeff, a class for storing regression coefficients.
stdcoeff,mergeCoeff-method Class mergeCoeff, a class for storing regression coefficients.
stdcoeff<-,mergeCoeff-method Class mergeCoeff, a class for storing regression coefficients.
subsetmES Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
summary,mergeExpressionSet-method Class mergeExpressionSet, a class for merged microarray data, and methods for processing them
zscore Class mergeCoeff, a class for storing regression coefficients.
zscore,mergeCoeff-method Class mergeCoeff, a class for storing regression coefficients.
zscore<-,mergeCoeff-method Class mergeCoeff, a class for storing regression coefficients.
[,mergeExpressionSet-method Class mergeExpressionSet, a class for merged microarray data, and methods for processing them