ped2geneSet {GeneticsBase} | R Documentation |
translate a ped matrix to a geneSet object
Description
Translate a ped matrix to a geneSet object.
Usage
ped2geneSet(ped,
markerNames,
columns=c("family", "pid", "father", "mother",
"sex", "affected"),
quiet=FALSE,
filename)
Arguments
ped |
pedigree data frame whose first 6 columns are family (pedigree id), pid (patient id), father (father id), mother (mother id), sex, affected (affection status). The remaining columns are pairs of marker alleles. Each row corresponds to an individual. |
markerNames |
names of markers |
columns |
names of the first 5 (or 6) columns of ped file. It should be either equal to c("family","pid","father","mother","
sex","affected") or equal to c("family","pid","father","mother","sex") |
quiet |
print intermediate results if quiet=FALSE . |
filename |
the name of the file recording the matrix ped . |
Value
geneSetObject |
an object of geneSet class |
Author(s)
Weiliang Qiu stwxq@channing.harvard.edu, Ross Lazarus ross.lazarus@channing.harvard.edu
[Package
GeneticsBase version 1.0.0
Index]