exportFASTA |
Exports getSequence results to FASTA format |
getAffyArrays |
Displays affy identifiers of Affymetrix chips supported by the Ensembl package |
getBM |
Retrieves information from the BioMart database |
getFeature |
Retrieves Feature starting from a gene symbol and array identifier |
getGene |
Retrieves Gene information |
getGO |
Retrieves GO information |
getHomolog |
Get homologs |
getINTERPRO |
Retrieves INTERPRO protein domain information |
getOMIM |
Retrieves OMIM information |
getPossibleXrefs |
Get possible cross-references in Ensembl |
getSequence |
Retrieves sequences |
getSNP |
Retrieves SNP's between a given chromosome start and end position |
getSpecies |
Displays species identifiers currently present in Ensembl |
getXref |
Get cross reference in Ensembl |
listAttributes |
lists the attributes available in the selected dataset |
listDatasets |
lists the datasets available in the selected BioMart database |
listFilters |
lists the filters available in the selected dataset |
listMarts |
list the BioMart database covered by biomaRt package |
Mart-class |
Class Mart |
martConnect |
Connects to available BioMarts |
martDisconnect |
Disconnects from BioMarts |
martTable-class |
Class martTable |
useDataset |
Select a dataset to use and updates Mart object |
useMart |
Connects to the selected BioMart |