Batch plot a list of extracted ion chromatograms to the current
graphics device or to files.
object |
the xcmsSet object |
eics |
list of EIC matricies as produced by link{getEIC}
|
peakrange |
matrix with named columns: mzmin , mzmax , rtmin ,
and rtmax
|
nums |
integer vector of indecies of EICs to plot
|
classlabel |
factor with class labels for each EIC matrix in the list
|
peakindex |
integer vector with indecies to the rows of the xcmsSet
group matrix corresponding to the rows of the peakrange
matrix
|
filebase |
base file name under which to save the numbered EICs, no image
files are saved if missing
|
wh |
integer vector of length two with pixel width and height of the
output PNG images
|
sleep |
seconds to pause between plotting EICs, only useful if
filebase is missing and the plots are interactively
output
|