plotAlongChrom {tilingArray}R Documentation

Plot microarray data and annotation features along a chromosomal region

Description

Plot microarray data and annotation features along a chromosomal region

Usage

plotAlongChrom(y, hybeType, chr, from, to, extend=0, gff, chrSeqname,
  probeAnno, probeLength=25)

Arguments

y vector of real numbers, one for each probe on the array.
hybeType character of length 1: either Reverse or Direct.
chr character or integer of length 1: which chromosome?
from integer of length 1: start coordinate
to integer of length 1: end coordinate
extend integer of length 1: extend start and end by how much
gff data frame with genome annotation from the GFF file.
chrSeqname character vector whose i-th element is the name of the i-th chromosome, as used in the seqname column of the gff table.
probeAnno a probe annotation environment.
probeLength integer of length 1: length of the microarray probes.

Details

No details.

Author(s)

Wolfgang Huber <huber@ebi.ac.uk>

Examples

  ## TO DO
 

[Package tilingArray version 1.0.2 Index]