plotAlongChrom {tilingArray} | R Documentation |
Plot microarray data and annotation features along a chromosomal region
plotAlongChrom(y, hybeType, chr, from, to, extend=0, gff, chrSeqname, probeAnno, probeLength=25)
y |
vector of real numbers, one for each probe on the array. |
hybeType |
character of length 1: either Reverse or Direct . |
chr |
character or integer of length 1: which chromosome? |
from |
integer of length 1: start coordinate |
to |
integer of length 1: end coordinate |
extend |
integer of length 1: extend start and end by how much |
gff |
data frame with genome annotation from the GFF file. |
chrSeqname |
character vector whose i-th element is the name of
the i-th chromosome, as used in the seqname column of the
gff table. |
probeAnno |
a probe annotation environment. |
probeLength |
integer of length 1: length of the microarray probes. |
No details.
Wolfgang Huber <huber@ebi.ac.uk>
## TO DO