Calibprestat-class {mscalib} | R Documentation |
Peptide rule based calibration. Determines calibration coefficients using the algorithm by
Wool and Smilansky. This class extends the class
Calibstat-class
.
Objects can be created by call to function getprecalib-methods
.
freq
:"numeric"
: the
theoretical peptide frequency (rule) of the database. default = 1.000495 ppm
:"logical"
: (TRUE)info
:"character"
: unique
identifier tcoor
:"numeric"
: target
coordinatesCoeff.Intercept
:"numeric"
:
intercept calibration coefficient Coeff.Slope
:"numeric"
: slope
calibration coefficient lengthmv
:"numeric"
: length of
the Massvector-class
quality
:"numeric"
: calibration
coefficients quality measure
Class "Calibstat"
, directly.
signature(obx = "Massvector", oby =
"Calibprestat")
: applys Calibprestat
to
Massvector
in order to calibrate the masses. signature(obx = "Massvectorlist", oby = "Calibprestat")
: ... signature(obx = "Calibprestat", oby = "Massvector")
: ... signature(from = "Calibprestat", to = "numeric")
: ... signature(from = "Calibprestat", to = "list")
: ... signature(x = "Calibprestat", y = "missing")
: ... signature(object = "Calibprestat")
: ... W.Wolski
A. Wool and Z. Smilansky "Precalibration of matrix-assisted laser desorption/ionization-time of flight spectra for peptide mass fingerprinting" 2002 Proteomics 2(10) 1365-1373
Calibstat-class
,Calibintstat-class
##---- Should be DIRECTLY executable !! ----