clusterStatisticHyper-class {goCluster} | R Documentation |
This class provides the hypergeometric distribution for goCluster and can be used to identify gene groups that show a significant enrichement of similar annotation terms.
The class provides a wrapper around the evalClusterHyper
function. Please read the corresponding documentation for further
details.
All slots are described in the documentation of the
clusterStatistic-class
and clusterModule-class
.
Class "clusterStatistic"
, directly.
Class "clusterModule"
, by class "clusterStatistic"
.
signature(object = "clusterStatisticHyper")
:
interactive setup of the class. There are no options that you can
set on this class.signature(object = "clusterStatisticHyper")
:
returns the configuration of the object as a list. Since there are
no options to this class, this is always an empty list. signature(object = "clusterStatisticHyper")
:
non-interactive setup of the class. Not necessary since this class
has no options.signature(object = "clusterStatisticHyper")
:
runs the statistical analysis on the clustering results provided
by the parent class. signature(object = "clusterStatisticHyper")
:
resets the results of this class so that the analysis can be run
again. Gunnar Wrobel, http://www.gunnarwrobel.de.
evalClusterHyper
,
goCluster-class
,
clusterModule-class
,
clusterStatistic-class