clusterStatisticHyper-class {goCluster}R Documentation

Class "clusterStatisticHyper" provides the hypergeometric distribution for the goCluster analysis.

Description

This class provides the hypergeometric distribution for goCluster and can be used to identify gene groups that show a significant enrichement of similar annotation terms.

Details

The class provides a wrapper around the evalClusterHyper function. Please read the corresponding documentation for further details.

Slots

All slots are described in the documentation of the clusterStatistic-class and clusterModule-class.

Extends

Class "clusterStatistic", directly. Class "clusterModule", by class "clusterStatistic".

Methods

config
signature(object = "clusterStatisticHyper"): interactive setup of the class. There are no options that you can set on this class.
setup
signature(object = "clusterStatisticHyper"): returns the configuration of the object as a list. Since there are no options to this class, this is always an empty list.
setup<-
signature(object = "clusterStatisticHyper"): non-interactive setup of the class. Not necessary since this class has no options.
execute
signature(object = "clusterStatisticHyper"): runs the statistical analysis on the clustering results provided by the parent class.
reset
signature(object = "clusterStatisticHyper"): resets the results of this class so that the analysis can be run again.

Author(s)

Gunnar Wrobel, http://www.gunnarwrobel.de.

See Also

evalClusterHyper, goCluster-class, clusterModule-class, clusterStatistic-class


[Package goCluster version 1.0.0 Index]