QCStats-class {simpleaffy} | R Documentation |
Holds Quality Control data for a set of Affymetrix arrays
Objects can be created by calls of the form qc(AffyBatch)
.
scale.factors
:"numeric"
Scale factors used to scale the chips to the specified target intensity target
:"numeric"
The target intensity to which the chips were scaled percent.present
:"numeric"
Number of genes called present average.background
:"numeric"
The average background for the arrays minimum.background
:"numeric"
The minimum background for the arrays maximum.background
:"numeric"
The maximum background for the arrays bioB
:"character"
bioB present call bioC
:"character"
bioC present call bioD
:"character"
bioD present call creX
:"character"
creX present call gapdh3
:"numeric"
gapdh 3' intensity gapdhM
:"numeric"
gapdh M intensity gapdh5
:"numeric"
gapdh 5' intensity actin3
:"numeric"
beta actin 3' intensity actinM
:"numeric"
beta actin M intensity actin5
:"numeric"
beta actin 5' intensity signature(object = "QCStats")
: beta actin 3' 5' ratio signature(object = "QCStats")
: beta actin 3' intensity signature(object = "QCStats")
: beta actin 3' M ratio signature(object = "QCStats")
: beta actin 5' intensity signature(object = "QCStats")
: beta actin M intensity signature(object = "QCStats")
: average backgroundsignature(object = "QCStats")
: bioB call signature(object = "QCStats")
: bioC call signature(object = "QCStats")
: bioD call signature(object = "QCStats")
: creX call signature(object = "QCStats")
: gapdh 3' 5' ratio signature(object = "QCStats")
: gapdh 3' intensity signature(object = "QCStats")
: gapdh 3' M ratio signature(object = "QCStats")
: gapdh 5' inensity signature(object = "QCStats")
: gapdh M intensity signature(object = "QCStats")
: maximum background signature(object = "QCStats")
: minimum background signature(object = "QCStats")
: no probesets called present signature(x = "QCStats")
: Plot a QCStats object signature(object = "QCStats")
: scale factors signature(object = "QCStats")
: target scaling Crispin J Miller