A B C D F G J M P Q R S T W misc
actin3 | Accessor Methods for QCStats class |
actin3,QCStats-method | Class "QCStats" |
actin3-methods | Class "QCStats" |
actin35 | Accessor Methods for QCStats class |
actin35,QCStats-method | Class "QCStats" |
actin35-methods | Class "QCStats" |
actin3M | Accessor Methods for QCStats class |
actin3M,QCStats-method | Class "QCStats" |
actin3M-methods | Class "QCStats" |
actin5 | Accessor Methods for QCStats class |
actin5,QCStats-method | Class "QCStats" |
actin5-methods | Class "QCStats" |
actinM | Accessor Methods for QCStats class |
actinM,QCStats-method | Class "QCStats" |
actinM-methods | Class "QCStats" |
avbg | Accessor Methods for QCStats class |
avbg,QCStats-method | Class "QCStats" |
avbg-methods | Class "QCStats" |
bg.correct.sa | Simpleaffy Implementation of Mas5 Background Correction |
bioB | Accessor Methods for QCStats class |
bioB,QCStats-method | Class "QCStats" |
bioB-methods | Class "QCStats" |
bioC | Accessor Methods for QCStats class |
bioC,QCStats-method | Class "QCStats" |
bioC-methods | Class "QCStats" |
bioD | Accessor Methods for QCStats class |
bioD,QCStats-method | Class "QCStats" |
bioD-methods | Class "QCStats" |
call.exprs | Generate Expression Summaries for Affymetrix Data |
calls | Class "PairComp" Represents the results of pairwise comparison between two experimental factors |
calls,PairComp-method | Class "PairComp" Represents the results of pairwise comparison between two experimental factors |
creX | Accessor Methods for QCStats class |
creX,QCStats-method | Class "QCStats" |
creX-methods | Class "QCStats" |
detection.p.val | Calculate Detection P Values |
fc | Class "PairComp" Represents the results of pairwise comparison between two experimental factors |
fc,PairComp-method | Class "PairComp" Represents the results of pairwise comparison between two experimental factors |
gapdh3 | Accessor Methods for QCStats class |
gapdh3,QCStats-method | Class "QCStats" |
gapdh3-methods | Class "QCStats" |
gapdh35 | Accessor Methods for QCStats class |
gapdh35,QCStats-method | Class "QCStats" |
gapdh35-methods | Class "QCStats" |
gapdh3M | Accessor Methods for QCStats class |
gapdh3M,QCStats-method | Class "QCStats" |
gapdh3M-methods | Class "QCStats" |
gapdh5 | Accessor Methods for QCStats class |
gapdh5,QCStats-method | Class "QCStats" |
gapdh5-methods | Class "QCStats" |
gapdhM | Accessor Methods for QCStats class |
gapdhM,QCStats-method | Class "QCStats" |
gapdhM-methods | Class "QCStats" |
get.annotation | Get annotation data for a gene list |
get.array.subset | Get a subset of arrays from an affybatch object, split by phnotypic data |
get.array.subset,AffyBatch-method | Get a subset of arrays from an affybatch object, split by phnotypic data |
get.array.subset,exprSet-method | Get a subset of arrays from an affybatch object, split by phnotypic data |
get.array.subset.affybatch | Get a subset of arrays from an affybatch object, split by phnotypic data |
get.array.subset.exprset | Get a subset of arrays from an affybatch object, split by phnotypic data |
get.fold.change.and.t.test | Compute fold change and t-test statistics between two experimental groups |
getActin3 | Gets the probesetid for the specified control probe |
getActin5 | Gets the probesetid for the specified control probe |
getActinM | Gets the probesetid for the specified control probe |
getAlpha1 | Gets the probesetid for the specified control probe |
getAlpha2 | Gets the probesetid for the specified control probe |
getBioB | Gets the probesetid for the specified control probe |
getBioC | Gets the probesetid for the specified control probe |
getBioD | Gets the probesetid for the specified control probe |
getCreX | Gets the probesetid for the specified control probe |
getGapdh3 | Gets the probesetid for the specified control probe |
getGapdh5 | Gets the probesetid for the specified control probe |
getGapdhM | Gets the probesetid for the specified control probe |
getQCParams | Get Array Dependent QC Parameters |
getQCParams,AffyBatch-method | Get Array Dependent QC Parameters |
getQCParams-methods | Get Array Dependent QC Parameters |
getTao | Gets the probesetid for the specified control probe |
group | Class "PairComp" Represents the results of pairwise comparison between two experimental factors |
group,PairComp-method | Class "PairComp" Represents the results of pairwise comparison between two experimental factors |
journalpng | Produce a device for producing artwork for presentations and journals |
justMAS | Generate Expression calls using a C implementation of the MAS 5.0 Algorithm |
maxbg | Accessor Methods for QCStats class |
maxbg,QCStats-method | Class "QCStats" |
maxbg-methods | Class "QCStats" |
means | Class "PairComp" Represents the results of pairwise comparison between two experimental factors |
means,PairComp-method | Class "PairComp" Represents the results of pairwise comparison between two experimental factors |
members | Class "PairComp" Represents the results of pairwise comparison between two experimental factors |
members,PairComp-method | Class "PairComp" Represents the results of pairwise comparison between two experimental factors |
minbg | Accessor Methods for QCStats class |
minbg,QCStats-method | Class "QCStats" |
minbg-methods | Class "QCStats" |
PairComp-class | Class "PairComp" Represents the results of pairwise comparison between two experimental factors |
pairwise.comparison | Compute pairwise comparison statistics between two experimental groups |
pairwise.filter | Filter pairwise comparison statistics between two experimental groups |
pairwise.filter,PairComp-method | Class "PairComp" Represents the results of pairwise comparison between two experimental factors |
percent.present | Accessor Methods for QCStats class |
percent.present,QCStats-method | Class "QCStats" |
percent.present-methods | Class "QCStats" |
plot,QCStats | Plots a QCStats object |
plot,QCStats-method | Plots a QCStats object |
plot.qc.stats | Plots a QCStats object |
qc | Generate QC stats from an AffyBatch object |
qc,AffyBatch-method | Generate QC stats from an AffyBatch object |
qc.affy | Generate Affymetrix Style QC Statistics |
QCStats-class | Class "QCStats" |
read.affy | Read a Set of .CEL Files and Phenotypic Data |
results.summary | Get annotation data for a gene list |
screenpng | Produce a device for producing artwork for presentations and journals |
sfs | Accessor Methods for QCStats class |
sfs,QCStats-method | Class "QCStats" |
sfs-methods | Class "QCStats" |
target | Accessor Methods for QCStats class |
target,QCStats-method | Class "QCStats" |
target-methods | Class "QCStats" |
trad.scatter.plot | Does a Traditional Scatter Plot of Expression Data |
tt | Class "PairComp" Represents the results of pairwise comparison between two experimental factors |
tt,PairComp-method | Class "PairComp" Represents the results of pairwise comparison between two experimental factors |
write.annotation | Get annotation data for a gene list |
[,PairComp-method | Class "PairComp" Represents the results of pairwise comparison between two experimental factors |
[<-,PairComp-method | Class "PairComp" Represents the results of pairwise comparison between two experimental factors |