cdfenvs {altcdfenvs} | R Documentation |
A set of functions to handle cdfenvs
wrapCdfEnvAffy(cdfenv, nrow.chip, ncol.chip, chiptype) getCdfEnvAffy(abatch) buildCdfEnv.matchprobes(matches, ids, probes.pack, abatch=NULL, nrow.chip=NULL, ncol.chip=NULL, chiptype=NULL, mm=NA, simplify = TRUE, x.colname = "x", y.colname = "y")
abatch |
an AffyBatch |
cdfenv |
A cdfenv environment |
chiptype |
A name for the chip type |
ids |
a vector of probe set identifiers for the matches |
matches |
a list as returned by the function
matchprobes |
mm |
The value to store for MMs |
ncol.chip |
The number of columns for the chip type |
nrow.chip |
The number of rows for the chip type |
probes.pack |
The name of the probe package |
simplify |
Simplify the environment created by removing the ids without any matching probe |
x.colname, y.colname |
see the getxy.probeseq |
The class CdfEnv
is defined as S3 to ensure compatibility with
what is existing while changes are made.
Migration to S4 is likely to happen after that...
An instance of class CdfEnv
.
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