plotSummaryProfile {aCGH} | R Documentation |
This function display the genomic events and tests for the differences between groups if they are specified.
plotSummaryProfile(aCGH.obj, response = as.factor(rep("All", ncol(aCGH.obj))), titles = unique(response[!is.na(response)]), X = TRUE, Y = FALSE, maxChrom = 23, chrominfo = human.chrom.info.Jul03)
aCGH.obj |
an object of aCGH class. |
response |
categorical phenotype to compare. defaults to all the samples being analyzed together. |
titles |
titles for the groups, defaults to the name of the response
|
X |
logical indicating whether X needs to be shown |
Y |
logical indicating whether Y needs to be shown |
maxChrom |
this parameter controls how many chromosomes will be plotted, from 1 to maxChrom. |
chrominfo |
a chromosomal information associated with the mapping of the data. |
This function utilizes output of the find.genomic.events
by plotting it and testing between groups. The test are performed
using kruskal-wallis rank test.
data(colorectal) ## Plotting summary of the sample profiles plotSummaryProfile(colorectal)