getBioSequence {MAGEML}R Documentation

Get BioSequence information

Description

This function parses the BioSequence package and returns a bioSequence object.

Usage

getBioSequence(file = "", datadir = ".")

Arguments

file XML document containing the BioSequence package.
datadir The directory where XML file resides.

Value

bioSequence object

Author(s)

Joke Allemeersch, http://www.esat.kuleuven.ac.be/~jallemee
Steffen Durinck, http://www.esat.kuleuven.ac.be/~sdurinck.

References

Spellman PT, Miller M, Stewart J, Troup C, Sarkans U, Chervitz S, Bernhart D, Sherlock G, Ball C, Lepage M, Swiatek M, Marks WL, Goncalves J, Markel S, Iordan D, Shojatalab M, Pizarro A, White J, Hubley R, Deutsch E, Senger M, Aronow BJ, Robinson A, Bassett D, Stoeckert CJ Jr and Brazma A. Design and implementation of microarray gene expression markup language (MAGE-ML). Genome Biol. 2002 Aug 23;3(9):RESEARCH0046.

See Also

bioSequence

Examples

data <- system.file("data", package="MAGEML")
getBioSequence(file="Iron.xml",datadir=data)

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