homoPS-class {AnnBuilder} | R Documentation |
A class to present data for HomologGene percent similarity data
Objects can be created by calls of the form new("homoPS", ...)
.
psOrg
:"character"
the
scientific name of the organism of interestpsLL
:"character"
the LocusLink
id of the gene of interestpsType
:"character"
the type of
similarity. Valid values include B - a recipiprocal best best
between 3 or more organisms, b - a reciprocal best match, and c -
a curated homology relationshipps
:"numeric"
percent
similarity valuepsURL
:"character"
the URL for
curated homology relationshipsignature(object = "homoPS")
: the get function for
slot ps
signature(object = "homoPS")
: the get function
for slot psLL
signature(object = "homoPS")
: the get function
for slot psOrg
signature(object = "homoPS")
: the get function
for slot psType
signature(object = "homoPS")
: the get function
for slot psURL
This function is part of the Bioconductor project at Dana-Farber Cancer Institute to provide Bioinfomatics functionalities throug R
Jianhua Zhang
ftp://ftp.ncbi.nih.gov/pub/HomoloGene/README
new("homoPS", ps = 82.3, psLL = "2324853", psOrg = "Homo sapins", psType = "B", psURL = "")