homoPS-class {AnnBuilder}R Documentation

Class "homoPS"

Description

A class to present data for HomologGene percent similarity data

Objects from the Class

Objects can be created by calls of the form new("homoPS", ...).

Slots

psOrg:
Object of class "character" the scientific name of the organism of interest
psLL:
Object of class "character" the LocusLink id of the gene of interest
psType:
Object of class "character" the type of similarity. Valid values include B - a recipiprocal best best between 3 or more organisms, b - a reciprocal best match, and c - a curated homology relationship
ps:
Object of class "numeric" percent similarity value
psURL:
Object of class "character" the URL for curated homology relationship

Methods

ps
signature(object = "homoPS"): the get function for slot ps
psLL
signature(object = "homoPS"): the get function for slot psLL
psOrg
signature(object = "homoPS"): the get function for slot psOrg
psType
signature(object = "homoPS"): the get function for slot psType
psURL
signature(object = "homoPS"): the get function for slot psURL

Note

This function is part of the Bioconductor project at Dana-Farber Cancer Institute to provide Bioinfomatics functionalities throug R

Author(s)

Jianhua Zhang

References

ftp://ftp.ncbi.nih.gov/pub/HomoloGene/README

See Also

homoPkgBuilder

Examples

    new("homoPS", ps = 82.3, psLL = "2324853", psOrg = "Homo sapins",
psType = "B", psURL = "")

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