visualiseQualityParameters {arrayMagic} | R Documentation |
Graphical representation of quality parameters
visualiseQualityParameters(qualityParameters, savePath, fileName="visualiseQualityParametersOutput.pdf", width=25, height=25, plotOutput="pdf")
qualityParameters |
data.frame ; required;
contained in the return value of
qualityParameters |
fileName |
character string; required; default: "visualiseQualityParametersOutput.pdf" |
savePath |
character string; optional; default: missing |
width |
graphics window width |
height |
graphics window height |
plotOutput |
character string; required; either "screen", "pdf" or "win.metafile"; default: "pdf" |
For details on the specific parameters
see qualityParameters
.
Lines are only used for easier
detection of outliers. The ordering
of the hybridisation is somehow arbitrary,
and only reflects the (initial) ordering.
The "correlation" line for example
graphically represents the correlation
coefficients calculated between the
green and red channel for each hybridisation.
The horizontal blue line is drawn
at the height of one. The function
qualityDiagnostics
calls
visualiseQualityParameters
.
A graphical representation of quality parameters.
qualityDiagnostics
does call
visualiseQualityParameters
Andreas Buness <a.buness@dkfz.de>
qualityParameters
;
qualityDiagnostics