Transcriptogram-class {transcriptogramer}R Documentation

Class Transcriptogram

Description

This S4 class includes methods to use expression values with ordered proteins.

Slots

association

A data.frame containing two columns, and rows containing proteins names that are connected.

ordering

A data.frame containing two columns, the first one with proteins names, and the second containing its respective position.

transcriptogramS1

A data.frame produced as the result of averaging over all identifiers related to the same protein.

transcriptogramS2

A data.frame produced as the result of averaging over the window.

radius

An integer, non negative, number referring to the window radius.

status

An integer used internally to check the status of the object.

DE

A data.frame of differentially expressed proteins.

Author(s)

Diego Morais

See Also

transcriptogramPreprocess, DE, radius, orderingProperties, connectivityProperties, transcriptogramStep1, transcriptogramStep2, differentiallyExpressed, clusterVisualization, clusterEnrichment


[Package transcriptogramer version 1.2.1 Index]