transcriptogramPreprocess {transcriptogramer} | R Documentation |
Constructor for the Transcriptogram object.
transcriptogramPreprocess(association, ordering, radius = 0L)
association |
A matrix, or data.frame, containing two columns of ENSEMBL Peptide IDs (character); or the path for a file containing two columns, no header, with rows composed by the ENSEMBL Peptide IDs of two proteins that are connected. |
ordering |
A character vector containing ordered ENSEMBL Peptide IDs; a data.frame containing two columns, the first one with ENSEMBL Peptide IDs (character), and the second containing its respective position (integer non negative); or the path for a file containing two columns, a row for the headers, with rows composed respectively, by a ENSEMBL Peptide ID and its respective position. |
radius |
An integer, non negative, number referring to the window radius required for some methods. |
A preprocessed object of class Transcriptogram.
Diego Morais
Transcriptogram-class, association, Hs900
transcriptogram <- transcriptogramPreprocess(association, Hs900)