Transcriptogram-class {transcriptogramer} | R Documentation |
This S4 class includes methods to use expression values with ordered proteins.
association
A data.frame containing two columns, and rows containing proteins names that are connected.
ordering
A data.frame containing two columns, the first one with proteins names, and the second containing its respective position.
transcriptogramS1
A data.frame produced as the result of averaging over all identifiers related to the same protein.
transcriptogramS2
A data.frame produced as the result of averaging over the window.
radius
An integer, non negative, number referring to the window radius.
status
An integer used internally to check the status of the object.
DE
A data.frame of differentially expressed proteins.
Diego Morais
transcriptogramPreprocess, DE, radius, orderingProperties, connectivityProperties, transcriptogramStep1, transcriptogramStep2, differentiallyExpressed, clusterVisualization, clusterEnrichment