getTranscripts {transcriptR} | R Documentation |
Retrieve transcripts information from the TranscriptionDataSet
object.
getTranscripts(object, min.length, min.fpkm, min.coverage) ## S4 method for signature 'TranscriptionDataSet' getTranscripts(object, min.length, min.fpkm, min.coverage)
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min.length |
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min.fpkm |
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min.coverage |
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The coverage is a measure of how densely the transcript is covered by the sequencing fragments. Modestly/highly expressed transcripts will have a value close to 1, whereas lowly expressed transcripts will have a value close to 0, indicating the sparse distribution of sequencing fragments along the transcript body.
A GRanges
object.
Armen R. Karapetyan
### Load TranscriptionDataSet object data(tds) ### View detected transcripts getTranscripts(tds)