sRNADiffExp {srnadiff}R Documentation

Constructor.

Description

Constructor.

Usage

sRNADiffExp(annotation = NULL, bamFileNames, replicates, conditions,
  lazyload = FALSE)

Arguments

annotation

The GRanges annotation

bamFileNames

The name of one read file in BAM format.

replicates

The names of the replicates.

conditions

The condition to which each replicate belongs.

lazyload

Usual for S4 functions.

Value

An sRNADiff object.

Examples

dir         <- system.file("extdata", package="srnadiff", mustWork = TRUE)
data        <- read.csv(file.path(dir, "data.csv"))
gtfFile     <- file.path(dir, "Homo_sapiens.GRCh38.76.gtf.gz")
annotation  <- readWholeGenomeAnnotation(gtfFile)
bamFiles    <- file.path(dir, data$FileName)
replicates  <- data$SampleName
conditions  <- factor(data$Condition)
exp         <- sRNADiffExp(annotation, bamFiles, replicates, conditions)


[Package srnadiff version 1.0.0 Index]