ssvFeatureBinaryHeatmap {seqsetvis} | R Documentation |
binary heatmap indicating membership. heatmap is sorted by column left to right. change column order to reveal patterns
ssvFeatureBinaryHeatmap(object, raster_approximation = FALSE, true_color = "black", false_color = "#EFEFEF", raster_width_min = 1000, raster_height_min = 1000)
object |
passed to ssvMakeMembTable |
raster_approximation |
If TRUE, instead of standard ggplot, write temporary raster png image and redraw that as plot background. default is FALSE |
true_color |
character. rcolor or hex color used for TRUE values. default is "black". |
false_color |
character. rcolor or hex color used for TRUE values. default is "#EFEFEF", a gray. |
raster_width_min |
raster width will be minimum multiple of number of columns over this number. ignored if raster_approximation is FALSE. |
raster_height_min |
raster height will be minimum multiple of number of rows over this number ignored if raster_approximation is FALSE |
ggplot using geom_tile of membership table sorted from left to right.
ssvFeatureBinaryHeatmap(list(1:3, 2:6)) # horizontal version ssvFeatureBinaryHeatmap(list(1:3, 2:6)) + coord_flip() + theme(axis.text.x = element_blank(), axis.text.y = element_text()) ssvFeatureBinaryHeatmap(CTCF_in_10a_overlaps_gr) ssvFeatureBinaryHeatmap(S4Vectors::mcols(CTCF_in_10a_overlaps_gr)[,2:3]) ssvFeatureBinaryHeatmap(S4Vectors::mcols(CTCF_in_10a_overlaps_gr)[,3:2])