biplot_interactive {scone} | R Documentation |
This is a wrapper around biplot_color
, creating a shiny gadget
to allow the user to select specific points in the graph.
biplot_interactive(x, ...)
x |
a |
... |
passed to |
Since this is based on the shiny gadget feature, it will not work
in static documents, such as vignettes or markdown / knitr documents. See
biplot_color
for more details on the internals.
A SconeExperiment
object representing
selected methods.
mat <- matrix(rpois(1000, lambda = 5), ncol=10) colnames(mat) <- paste("X", 1:ncol(mat), sep="") obj <- SconeExperiment(mat) res <- scone(obj, scaling=list(none=identity, uq=UQ_FN, deseq=DESEQ_FN, fq=FQT_FN), evaluate=TRUE, k_ruv=0, k_qc=0, eval_kclust=2, bpparam = BiocParallel::SerialParam()) ## Not run: biplot_interactive(res) ## End(Not run)