coverage {scmeth} | R Documentation |
Provides Coverage for each cell in a library pool
coverage(bs, subSample = 1e+06, offset = 50000)
bs |
bsseq object |
subSample |
number of CpGs to subsample. Default value is 1000000. |
offset |
how many CpGs to offset when subsampling Default value is set to be 50000, i.e. first 50000 CpGs will be ignored in subsampling. |
vector of coverage for the cells in bs object
directory <- system.file("extdata/bismark_data",package='scmeth') bs <- HDF5Array::loadHDF5SummarizedExperiment(directory) coverage(bs)