NucleotideDistr-class {rnaSeqMap} | R Documentation |
An S4 class that inherits from eSet
and holds all the numeric distributions of functions defined over the genome.
The values may include coverage, splicing, fold change, etc. for a region defined by
genomic coordinates.
Objects of this class contain (at least) the following list components:
chr
: numeric matrix containing the read counts.
start
: data.frame containing the library size and group labels.
end
: data.frame containing the library size and group labels.
strand
: data.frame containing the library size and group labels.
start
: data.frame containing the library size and group labels.
distribs
gives the matrix of distributions from assayData
getDistr
gives a single distributions from assayData
as a vector
newNuctleotideDistr (distribs, chr, start, end, strand, type="UNKNOWN", phenoData=NULL, featureData=NULL)
constructor from a matrix of data and chromosome coordinates.
Anna Lesniewska, Michal Okoniewski
SeqReads, NDtransforms