measures {rnaSeqMap}R Documentation

Measures

Description

Various measures to find differential expression.

Usage


ks_test(dd)
diff_area(dd, cconst)
diff_derivative_area(dd, cconst)
qq_plot(dd)
qq_derivative_plot(dd)
pp_plot(dd)
pp_derivative_plot(dd)
hump_diff1(dd)
hump_diff2 (dd)

Arguments

dd

a matrix with 2 columns for samples and rows for nucleotides, containing coverage data (like from BED files)

cconst

NULL default

The measures give various assesment of the difference between two sequencing samples shapes. Full description will follow in the paper.

Author(s)

Anna Lesniewska,Michal Okoniewski

Examples

# if (xmapConnected())  
#  {
#   ks_test(dd)
#  }

[Package rnaSeqMap version 2.38.0 Index]