getBamData {rnaSeqMap} | R Documentation |
Add data from experimental samples stored in BAM file.
getBamData(rs, exps = NULL, cvd = NULL, covdesc.file = "covdesc")
rs |
SeqReads object to modify |
exps |
Vector of numbers of experimental samples |
cvd |
Covdesc-like data frame - BAM files are read from row names |
covdesc.file |
Alternatively, the experiment description file |
SeqReads object with samples added from the BAM files. List of BAM files comes from the covdesc. The covdesc content becomes phenoData of the object.
Michal Okoniewski, Anna Lesniewska
# if (xmapConnected()) # { # rs <- newSeqReads(1,1,20000,1) # rs <- getBamData(rs,1:3) # }