gRanges2CamelMeasures {rnaSeqMap} | R Documentation |
Various plots of genomic coverage for data from NucleotideDistr
objects
gRanges2CamelMeasures(gR, cvd, sample.idx1, sample.idx2, sums=NULL, progress=NULL) allCamelMeasuresForRegion(ch, st, en, str, cvd, sample.idx1, sample.idx2, sums=NULL)
ch |
chromosome name |
st |
genomic start |
en |
genomic end |
str |
strand |
cvd |
name of the file with BAM description - covdesc |
gR |
GenomicRanges object to use as a set of genomic regions to query |
sample.idx1,sample.idx2 |
sample indices |
sums |
the vector of sums for normalization |
progress |
every how many regions print a dot for progress indicator |
Michal Okoniewski
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