normalizations {rnaSeqMap} | R Documentation |
Various normalization methods.
standarizationNormalize(nd) min_maxNormalize(nd) densityNormalize(nd) globalCountsNormalize(nd, sums)
nd |
nucleotide distribution object |
sums |
sum of reads in a sequencing sample |
Normalizations of a single coverage profile for multiple
samples contained in the NucleotideDistr
object.
Full description will follow in a paper.
Anna Lesniewska,Michal Okoniewski
# if (xmapConnected()) # { # s <- newSeqReads('chr2', 220238268, 220254744, -1) # f <- c("test1.bam", "test2.bam", "test3.bam", "test4.bam", "test5.bam") # ff <- sapply(f, function(x) system.file("extdata", x, package = "rnaSeqMap")) # rs <- getBamData(rs, 1:5, files = ff) # nd <- getCoverageFromRS(rs, 1:5) # min_maxNormalize(nd) # }