commonRegions {regioneR} | R Documentation |
Returns the regions that are common in two region sets, its intersection.
commonRegions(A, B)
A |
a region set in any of the accepted formats by |
B |
a region set in any of the accepted formats by |
It returns a GenomicRanges
object with the regions present in both region sets.
All metadata (additional columns in the region set in addition to chromosome, start and end) will be ignored and not present in the returned region set.
plotRegions
, toDataframe
, toGRanges
, subtractRegions
, splitRegions
, extendRegions
, joinRegions
, mergeRegions
, overlapRegions
A <- data.frame("chr1", c(1, 10, 20, 30), c(12, 13, 28, 40)) B <- data.frame("chr1", 25, 35) commons <- commonRegions(A, B) plotRegions(list(A, B, commons), chromosome="chr1", regions.labels=c("A", "B", "common"), regions.colors=3:1)