buildAnnotationStore {recoup} | R Documentation |
This function creates a local annotation database to be used with recoup so as to avoid long time on the fly annotation downloads and formatting.
buildAnnotationStore(organisms, sources, home = file.path(path.expand("~"), ".recoup"), forceDownload = TRUE, rc = NULL)
organisms |
a character vector of organisms
for which to download and build annotations. Check
the main |
sources |
a character vector of public sources
from which to download and build annotations. Check
the main |
home |
a valid path (accessible at least by the
current user) where the annotation database will be
set up. It defaults to |
forceDownload |
by default,
|
rc |
fraction (0-1) of cores to use in a multicore
system. It defaults to |
The function does not return anything. Only the annotation directory and contents are created.
Panagiotis Moulos
buildAnnotationStore("mm9","ensembl")