addBiopaxInstances {rBiopaxParser} | R Documentation |
This function adds new instances (supplied as a compatible data.table) to an existing biopax model via rbind. Usually you want to start out at createBiopax and addPhysicalEntity and work your way up the ontology ladder.
addBiopaxInstances(biopax, newInstancesDF)
biopax |
A biopax model |
newInstancesDF |
data.table or data.frame. Must be compatible with internal biopax implementation. |
Returns the supplied biopax model with the new instances added.
Frank Kramer
# load data data(biopaxexample) biopax_temp = createBiopax(level=2) biopax_temp = addBiopaxInstance(biopax_temp, class="protein", id="id1", properties=list(NAME="protein1",SYNONYMS="p1")) selectInstances(biopax_temp) biopax = addBiopaxInstances(biopax, selectInstances(biopax_temp))