limmaAnalysis {phantasus} | R Documentation |
limmaAnalysis
performs differential expression analysis
from limma package and returns a ProtoBuf-serialized resulting
de-matrix.
limmaAnalysis(es, rows = c(), columns = c(), fieldValues)
es |
ExpressionSet object. It should be normalized for more accurate analysis. |
rows |
Vector of specified rows' indices (optional). |
columns |
Vector of specified columns' indices (optional). |
fieldValues |
Vector of comparison values, mapping categories' names to columns/samples (must be equal length with columns' vector if specified). |
Name of the file containing serialized de-matrix.
## Not run: data(es) limmaAnalysis(es, fieldValues = c("A", "A", "A", "B", "B")) ## End(Not run)