pcxn_gene_members {pcxn}R Documentation

Acquire the gene members of a pathway from the pcxnData package

Description

Acquire the gene members of one of the available pathways that belong to MSigDB H hallmark pathways, MSigDB C2 Canonical pathways, MSigDB C5 GO BP gene sets or Pathprint genesets

Usage

pcxn_gene_members(pathway_name = "Alzheimer's disease (KEGG)")

Arguments

pathway_name

the pathway whose members we want

Value

a matrix of Entrez IDs and gene symbols

Author(s)

Sokratis Kariotis

Examples

# Get the members of a single pathway
pcxn_gene_members("Alzheimer's disease (KEGG)")

[Package pcxn version 2.2.0 Index]