oligoSet {oligoClasses} | R Documentation |
An example instance of the oligoSnpSet
class
data(oligoSetExample)
Created from the simulated locusLevelData provided in this package.
## Not run: ## 'oligoSetExample' created by the following data(locusLevelData) oligoSet <- new("oligoSnpSet", copyNumber=integerMatrix(log2(locusLevelData[["copynumber"]]/100), 100), call=locusLevelData[["genotypes"]], callProbability=locusLevelData[["crlmmConfidence"]], annotation=locusLevelData[["platform"]], genome="hg19") oligoSet <- oligoSet[!is.na(chromosome(oligoSet)), ] oligoSet <- oligoSet[chromosome(oligoSet) < 3, ] ## End(Not run) data(oligoSetExample) oligoSet