factor.responses.minimal {netresponse} | R Documentation |
List responses for each level of the given factor
factor.responses.minimal(annotation.vector, groupings, method = "hypergeometric", min.size = 2, data = NULL)
annotation.vector |
annotation vector with discrete factor levels, and named by the samples |
groupings |
List of groupings. Each model should have a sample-cluster assignment matrix qofz, or a vector of cluster indices named by the samples. |
method |
method for enrichment calculation |
min.size |
minimum sample size for a response |
data |
data (samples x features; or a vector in univariate case) |
List with each element corresponding to one factor level and listing the responses according to association strength
Contact: Leo Lahti leo.lahti@iki.fi
See citation("netresponse")