factor.responses.minimal {netresponse}R Documentation

Factor responses (minimal)

Description

List responses for each level of the given factor

Usage

factor.responses.minimal(annotation.vector, groupings,
  method = "hypergeometric", min.size = 2, data = NULL)

Arguments

annotation.vector

annotation vector with discrete factor levels, and named by the samples

groupings

List of groupings. Each model should have a sample-cluster assignment matrix qofz, or a vector of cluster indices named by the samples.

method

method for enrichment calculation

min.size

minimum sample size for a response

data

data (samples x features; or a vector in univariate case)

Value

List with each element corresponding to one factor level and listing the responses according to association strength

Author(s)

Contact: Leo Lahti leo.lahti@iki.fi

References

See citation("netresponse")


[Package netresponse version 1.40.0 Index]