motifLatexTable {motifRG} | R Documentation |
create a latex table to be embedded in a latex document
motifLatexTable(motifs, main="", prefix="motif", dir=".", height=1, width=3,enriched.only=F, plot.pwm= TRUE, summary.cols=c(1,7,8,9),use.mask=TRUE) motifHtmlTable(motifs, dir="html", prefix="motif", enriched.only=F, plot.pwm= TRUE, summary.cols=c(1,7,8,9),use.mask=TRUE)
motifs |
result of findMotif |
main |
The title of table |
prefix |
The prefix for the filenames of motif logos |
dir |
The directory for storing motif logo files |
height, width |
size of the sequence logo |
enriched.only |
If true, list only enriched motifs |
plot.pwm |
If true, plot PWM logo instead of di-nucleotide logo |
summary.cols |
The selected columns of summary table created by summaryMotif included in the table |
use.mask |
If true, use masked motif match summary statistics |
motifLatexTable outputs a latex table to the stdout console. motifHtmlTable outputs a html file named as <preix>.html in "dir" directory.
data(ctcf.motifs) ### Create table of motifs in Latex motifLatexTable(ctcf.motifs, main="CTCF motifs", dir="motif") ### Create table of motifs in Html motifHtmlTable(ctcf.motifs, dir="Html")