get.ucsc.query {metaseqR} | R Documentation |
Returns an SQL query to be used with a connection to the UCSC Genome Browser database and fetch metaseqR supported organism annotations. This query is constructed based on the data source and data type to be returned.
get.ucsc.query(org, type, refdb="ucsc")
org |
one of metaseqR supported organisms. |
type |
either |
refdb |
one of |
A valid SQL query.
Panagiotis Moulos
db.query <- get.ucsc.query("hg18","gene","ucsc")