make.stat {metaseqR} | R Documentation |
Returns a matrix of statistics calculated for a set of given samples. Internal use.
make.stat(samples, data.list, stat, export.scale)
samples |
a set of samples from the dataset under
processing. They should match sample names from
|
data.list |
a list containing natural or transformed
data, typically an output
from |
stat |
the statistics to calculate. Can be one or
more of |
export.scale |
the output transformations used as
input also to |
A matrix of statistics calculated based on the input sample names. The different data transformnations are appended columnwise.
Panagiotis Moulos
data.matrix <- round(1000*matrix(runif(400),100,4)) rownames(data.matrix) <- paste("gene_",1:100,sep="") colnames(data.matrix) <- c("C1","C2","T1","T2") tr <- make.transformation(data.matrix,c("log2","vst")) st <- make.stat(c("C1","C2"),tr,c("mean","sd"),c("log2","vst"))