diagplot.cor {metaseqR} | R Documentation |
This function uses the read counts matrix to create heatmap or correlogram correlation plots.
diagplot.cor(mat, type = c("heatmap", "correlogram"), output = "x11", path = NULL, ...)
mat |
the read counts matrix or data frame. |
type |
create heatmap of correlogram plots. |
output |
one or more R plotting device to direct the
plot result to. Supported mechanisms: |
path |
the path to create output files. |
... |
further arguments to be passed to plot
devices, such as parameter from |
The filename of the pairwise comparisons plot produced if it's a file.
Panagiotis Moulos
require(DESeq) data.matrix <- counts(makeExampleCountDataSet()) diagplot.cor(data.matrix,type="heatmap") diagplot.cor(data.matrix,type="correlogram")