make.sim.data.tcc {metaseqR} | R Documentation |
This function creates simulated RNA-Seq gene expression
datasets using the simulateReadCounts
function
from the Bioconductor package TCC and it adds simulated
annoation elements. For further information please
consult the TCC package documentation.
make.sim.data.tcc(...)
... |
parameters to the |
A list with the following members: simdata
holding
the simulated dataset complying with metaseqr
requirements, and simparam
holding the simulation
parameters (see TCC documentation). Note that the produced
data are based in an Arabidopsis dataset.
Panagiotis Moulos
dd <- make.sim.data.tcc(Ngene=10000,PDEG=0.2, DEG.assign=c(0.9,0.1), DEG.foldchange=c(5,5),replicates=c(3,3)) head(dd$simdata)