get.preset.opts {metaseqR} | R Documentation |
This is a helper function which returns a set of metaseqr pipeline options, grouped together according to a preset keyword. It is intended mostly for internal use.
get.preset.opts(preset, org)
preset |
preset can be one of |
org |
one of the supported organisms. See
|
A named list with names exon.filters
,
gene.filters
, pcut
, export.what
,
export.scale
, export.values
and
export.stats
, each of which correspond to an
element of the metaseqr pipeline.
Panagiotis Moulos
strict.preset <- get.preset.opts("strict.basic","mm9")