mock_mgF {metagenomeFeatures}R Documentation

Example mgFeatures class object

Description

Example mgFeatures-class object generated using the annotateFeatures MgDb-class method. The dataset contains the OTU ids and Greengenes database version 13.5 ids. Specifically, the OTU centers came from a mock community dataset from the study Bokulich et al. 2013, the OTU ids were extracted from a biom file downloaded from QIITA (https://qiita.ucsd.edu).

Usage

mock_mgF

Format

mgFeatures

Details

Bokulich, Nicholas A., et al. "Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing." Nature methods 10.1 (2013): 57-59.

Source

https://qiita.ucsd.edu

Examples

data(mock_mgF)

[Package metagenomeFeatures version 2.0.0 Index]